Download External Tools Package
The different operating systems packages contain executables of the following software:
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| bedGraphToBigWig-4 |
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| bedtools2-2.20.1 |
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| BLAST-2.2.26 |
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| BLAST-2.2.28+ |
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| Bowtie-1.0.0 |
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| Bowtie2-2.1.0 |
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| Bowtie2-2.0.6 |
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| BWA-0.7.8 |
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| CAP3 |
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| ClustalO-1.2.0 |
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| ClustalW-2.1 |
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| MAFFT-7.045b |
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| T-Coffee-9.03 |
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| Mr.Bayes-3.2.1 |
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| Spidey |
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| Conduct GO-1.0 |
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| MDSeqPos-2.0 |
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| Conservation Plot-0.1 |
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| peak2gene-1.0.2 |
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| MACS-1.4.2 |
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| CEAS-0.9.9.7 |
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| Cufflinks-2.0.2 |
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| SAMtools-0.1.19 |
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| Tophat-2.0.8 |
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| Python-2.7.5 |
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| Perl-5.10.0.5 |
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| vcftools_0.1.11 |
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| tabix |
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| SPAdes 3.1.1 |
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| snpEff 4.1b |
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| FastQC 0.11.2 |
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| cutadapt 1.7.1 |
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To use an external tool download the appropriate package for your system, unpack it and set the path to the executable in the UGENE Application Settings.
To learn more refer to the External Tools documentation.