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Download External Tools Package

The different operating systems packages contain executables of the following software:

Windows bioinformatics tools package Linux bioinformatics tools package Mac OS X bioinformatics tools package
32 bit 64 bit 32 bit 64 bit 32 bit 64 bit
download download download download download download
bedGraphToBigWig-4 + + +
bedtools2-2.20.1 + + + + + +
BLAST-2.2.26 + + + + + +
BLAST-2.2.28+ + + + + + +
Bowtie-1.0.0 + + + +
Bowtie2-2.1.0 + + + + +
Bowtie2-2.0.6 +
BWA-0.7.8 + + + + + +
CAP3 + + + + + +
ClustalO-1.2.0 + + + + + +
ClustalW-2.1 + + + + + +
MAFFT-7.045b + + + + + +
T-Coffee-9.03 + + + + + +
Mr.Bayes-3.2.1 + + + + + +
Spidey + + + + +
Conduct GO-1.0 + + + +
MDSeqPos-2.0 + + + +
Conservation Plot-0.1 + + + +
peak2gene-1.0.2 + + + +
MACS-1.4.2 + + + +
CEAS-0.9.9.7 + + + +
Cufflinks-2.0.2 + +
SAMtools-0.1.19 + + + + + +
Tophat-2.0.8 + +
Python-2.7.5 + + + + + +
Perl-5.10.0.5 + +
vcftools_0.1.11 + + + + + +
tabix + + + +
SPAdes 3.1.1 + +
snpEff 4.1b + + + + + +
FastQC 0.11.2 + + + + + +
cutadapt 1.7.1 + + + + + +
download download download download download download
32 bit 64 bit 32 bit 64 bit 32 bit 64 bit
Windows Linux Mac OS X

To use an external tool download the appropriate package for your system, unpack it and set the path to the executable in the UGENE Application Settings.

To learn more refer to the External Tools documentation.