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General Category >> Video Tutorials >> UGENE video tutorials #24: SITECON: Searching for TFBS and making TFBS alignments profiles
http://ugene.net/forum/YaBB.pl?num=1277815258

Message started by Alexey Filippenko on Jun 29th, 2010 at 7:40pm

Title: UGENE video tutorials #24: SITECON: Searching for TFBS and making TFBS alignments profiles
Post by Alexey Filippenko on Jun 29th, 2010 at 7:40pm
UGENE SITECON plugin is a program package for searching for potential transcription factor binding sites. The tool is developed in Institute of Cytology and Genetics SB RAS.

The video shows how to use SITECON to search for TFBS in a DNA sequence and how to create SITECON profiles for future searches.

[media width=720]http://www.youtube.com/watch?v=243r5P_JhH4&fmt=18[/media]
http://www.youtube.com/watch?v=243r5P_JhH4

Title: Re: UGENE video tutorials #24: SITECON: Searching for TFBS and making TFBS alignments profiles
Post by Poh on May 9th, 2011 at 5:54pm
Can I put or select more than one profiles to search in 1 go?

Title: Re: UGENE video tutorials #24: SITECON: Searching for TFBS and making TFBS alignments profiles
Post by Mikhail Fursov on May 17th, 2011 at 8:25pm

Poh wrote on May 9th, 2011 at 5:54pm:
Can I put or select more than one profiles to search in 1 go?


With workflow designer: yes. With sequence view dialog - no.
Please add issue to the tracker if solution in sequence view is also actual.

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