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BLAST+ problems (Read 10171 times)
Jan 25th, 2012 at 11:33pm

PAL   Offline
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Posts: 3
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Dear UGENE developers,

I am facing some problems running a local BLAST+. The problem is the following:

I tried to run BLAST+ from UGENE the first time and went ok.
Next I tried to run BLAST from BioEdit and it also went fine.
When I tried to run BLAST+ from UGENE the following error message appeared:
[ERROR][16:08] Critical: (110.6) CNcbiRegistry: Syntax error in system-wide configuration file: NCBI C++ Exception:
[ERROR][16:08] "..\..\..\..\..\src\corelib\ncbireg.cpp", line 659: Error: ncbi::IRWRegistry::x_Read() - Badly placed '\' in the registry value: 'ROOT=C:\nASNLOAD=C:\BioEdit\tables\nDATA=C:\BioEdit\tables\' (m_Pos = 4)
[ERROR][16:08] Error: NCBI C++ Exception:
[ERROR][16:08] "..\..\..\..\..\src\corelib\ncbireg.cpp", line 659: Error: ncbi::IRWRegistry::x_Read() - Badly placed '\' in the registry value: 'ROOT=C:\nASNLOAD=C:\BioEdit\tables\nDATA=C:\BioEdit\tables\' (m_Pos = 4)
[ERROR][16:08] Task {Run NCBI BlastAll multitask} finished with error: "..\..\..\..\..\src\corelib\ncbireg.cpp", line 659: Error: ncbi::IRWRegistry::x_Read() - Badly placed '\' in the registry value: 'ROOT=C:\nASNLOAD=C:\BioEdit\tables\nDATA=C:\BioEdit\tables\' (m_Pos = 4)

I already uninstall both Bioedit and UGENE and install only UGENE but the problem still persists.

I also downloaded the external tools for Windows 64x but the problem still persists.

Can anybody help me? I suspect this should be hard to recover...

Best regards
PAL
 
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Reply #1 - Jan 26th, 2012 at 8:27pm

Olga Golosova   Offline
YaBB Administrator

Posts: 279
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Dear PAL,

It seems that the problem occurred because BioEdit wrote some lines into the "ncbi.ini" file.

UGENE doesn't need this file to run BLAST+. So, as a temporary solution you can try to search the "ncbi.ini" file in your file system and delete it.

However, we're going to fix this issue in future UGENE versions: https://ugene.unipro.ru/tracker/browse/UGENE-791

Kind regards,
Olga Golosova
Unipro UGENE Team
 
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Reply #2 - Feb 15th, 2012 at 3:08pm

Denis Kandrov   Offline
YaBB Administrator

Posts: 24
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Looks like a bug in the environment variables.
Can you send the values ​​of environment variables?
To do this, run cmd.exe and in the console, run the following commands
Code:
> c:
> set > env.txt
 


And send us the contents of the created file C:\env.txt or the file itself.

Best regards
Denis
« Last Edit: Feb 17th, 2012 at 12:21pm by Denis Kandrov »  
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