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NGS simulation (Read 760 times)
Apr 11th, 2016 at 5:35pm

Nikolay.P   Offline
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Hello,

would it be possible to integrate some sort of NGS readout simulation please? this would be very handy when testing NGS analysis pipeline/workflow etc.

Several tools are available online, e.g. ART

Weichun Huang, Leping Li, Jason R Myers, and Gabor T Marth. ART: a next-generation sequencing read simulator, Bioinformatics (2012) 28 (4): 593-594

niehs.nih.gov/research/resources/software/biostatistics/art/

Thank you!
 
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Reply #1 - Apr 12th, 2016 at 8:14pm

Olga Golosova   Offline
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Hello Nikolay,

Thank you for your request!

I've created an issue about that in our tracker (see UGENE-5264). However, please note that this issue has low priority for us, so it probably won't be integrated into UGENE in the nearest future in terms of free support.
 
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Reply #2 - Apr 13th, 2016 at 10:02pm

Nikolay.P   Offline
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Thank you.
 
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