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Workflow for to call LOH (Read 42 times)
Jan 14th, 2021 at 6:10am

andressa a   Offline
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Hi is there any workflow to call variants and loss of heterozygosity (LOH) in paired tumor/normal samples in UGENE? Like what VarScan does?

thanks
 
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Reply #1 - Jan 14th, 2021 at 12:39pm

Dmitrii Sukhomlinov   Offline
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Russia

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Hello,
There are two workflows in Workflow Designer for variant calling (Click "Run or Create Workflow" -> "Samples" tab on the left part -> text "call" to the "Filter" field), but there are no workflows for  LOH, unfortunately.
 

Best regards,
Dmitrii Sukhomlinov,
UGENE team.
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