Plugins
3D structure viewer Visualization of biological 3D molecular structures. Available from version 1.3 |
![]() |
Workflow DesignerAllows to create and run complex computational workflows. Available from version 1.3 |
![]() |
Query DesignerAllows to create and run complex query schemas which combine work of different algorithms via constraints. Available from version 1.9 |
![]() |
Chromatogram viewerDNA chromatograms viewer/editor. Available from version 1.2 |
![]() |
Circular viewerA circular viewer of a sequence. Available from version 1.6.2 |
![]() |
DNA AnnotatorSearch for sequence regions annotated with predefined set of annotations. Available from version 1.1 |
![]() |
DNA exportSet of DNA sequence export and conversion utilities. Available from version 1.1 |
![]() |
DNA graphs packageDraws graphs with various DNA sequence statistics. Available from version 1.0 |
![]() |
DNA statisticsGenerates exportable statistical reports for sequences and alignments. Available from version 1.4 |
![]() |
ORF markerAn utility to find open reading frames in DNA sequences. Available from version 1.2 |
![]() |
Remote queryAnnotates sequence by executing and scheduling requests to remote databases like NCBI-blast, CDD … Available from version 1.2 |
![]() |
Repeat finderFinds direct and invert repeats in DNA sequences. Available from version 1.4 |
|
Restriction enzymesMarks restriction enzymes cut sites in DNA sequences Available from version 1.4 |
|
Secondary structure predictionProtein secondarty structure prediction. Available from version 1.5 |
![]() |
SITECONSearch for transcription factor binding sites in DNA sequence. Available from version 1.3 |
![]() |
Smith-Waterman searchA complete Smith-Watertman search algorithm implementation Available from version 1.4 |
![]() |
HMM2Sequence analysis with profile hidden Markov models. |
![]() |
HMM3The newest profile hidden Markov models tools. Available from version 1.5 |
![]() |
uMUSCLEA multiple alignment algorithm for protein and nucleotide sequences. Available from version 1.2 |
![]() |
BowtieA graphical port of the Bowtie short read aligner. Available from version 1.7 |
|
UGENE genome alignerA fast short read aligner. Available from version 1.7 |
|
Weight matrixSearch for transcription factor binding sites in DNA sequence. Available from version 1.7 |
![]() |
DotplotBuilds dotplots for sequences and compare two biological sequences graphically. Available from version 1.7.1 |
![]() |
Primer3Port of the Primer3 tool. Available from version 1.5 |
|
External tool supportAllows to launch external tools (e.g. ClustalW, MAFFT) from UGENE. Available from version 1.7.2 |