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(English) Metagenomic Classification with Kraken

The workflow outputs two files: lib3.R1_001_Kraken_classification.txt: output by Kraken contains classification of with each NGS read, lib3.R1_001_Kraken_report.txt: a report file, generated by UGENE, with general statistics per each taxID. The second file is a tab-delimited text file. Open it in a Excel-like application. For each taxID the file contains, in particular, the following information: tax_name: more…



(English) PCR in silico

pcr in silico

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(English) Multiple Sequence Alignment Overview

UGENE Multiple Sequence Alignment Overview

UGENE Multiple Alignment Overview Multiple Alignment Editor has many features common to multiple sequence alignment tools like highlighting of diffidences to spot mutations, finding a subsequence in an alignment and gap removing. But sometimes you want to see the alignment as a whole, that is where the overview might help, this is one of the more…



(English) Public Databases

UGENE Public Database

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(English) UGENE 1.16

snpeff pipeline

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(English) ​Shared Databases in UGENE

Shared Database in UGENE

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(English) Amino-translations and Identical Sequences

Amino-translation

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(English) SNP Search and SNP Effect

UGENE Story

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(English) Pairwise Alignment and Remove Gaps

Pairwise Alignment

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(English) NGS Pipelines in UGENE

NGS pipeline in UGENE

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