UGENE home page

Description

It is a customized version of UGENE 1.12 with additional algorithms for forensics research.

Download links

Windows

How to use

Find intersections

ugenecl --task=intersections <parameters>

The list of parameters

Example

ugenecl --task=intersections --sample=D:/sample1.fasta --markers-dir=D:/markers/ --report=D:/report.txt --acc=98

Sequence dereplication

ugenecl --task=dereplicate <parameters>

The list of parameters

Example

ugenecl --task=dereplicate --in=D:/18_345.fasta  --out=D:/out.fa --accuracy=95 --report=D:/report.txt

Reduce sequences

ugenecl --task=reduce <parameters>

The list of parameters

Example

ugenecl --task=reduce --in-seqs=D:/18_345.fasta --in-db=D:/small-db.fasta --out=D:/reduced.fasta --accuracy=99.0

Alignment distance

The list of parameters

ugenecl --task=distance <parameters>

Example

ugenecl --task=distance --in-msa=D:/S6.aln --in-seqs=D:/S6.fasta --out=D:/report.txt --sep=","