Alignment Overview

The alignment overview is shown automatically in the Alignment Editor. To close the overview, click on the Overview toolbar button. To display a simple alignment overview, use the Show simple overview context menu item in the overview.

The following settings of the alignment overview are available:

Export overview as image - You can export both the graph alignment overview and the simple alignment overview as an image. Use this context menu item to do it. In the following dialog, select the required parameters and click on the Export button:

Display settings:

• Graph type - Sets the graph type: histogram, line graph, or area graph.
• Orientation - Sets the orientation: top to bottom or bottom to top.
• Set color - Sets the graph color.
• Calculation method - Sets the calculation method: strict, gaps, clustal, or highlighting.

To use these settings, go to the corresponding context menu items in the alignment overview.