Copying and Pasting Subalignment
To copy the current selection, click the Copy/Paste ‣ Copy selection item in the Actions main menu or the context menu. The hotkey for this action is Ctrl-C.
Additionally, you can copy the selection in different formats, such as FASTA, CLUSTALW, RICH TEXT (HTML), NEXUS, and MSF.
To copy a subalignment in a selected format, follow these steps:
Select the subalignment.
Select the Copy/Paste->Copy (custom format) context menu item in the context menu or use the hotkey Ctrl+Shift+C.
The global Options Panel tab will open:
Select the format and press the Copy button.
To paste any of the copied selections, use the Copy/Paste->Paste context menu item or the Ctrl+V shortcut.
To paste content before a selection, use the Copy/Paste->Paste (before selection) context menu item or the Ctrl+Alt+V shortcut.
To cut the selection, use the Copy/Paste->Cut context menu item or the Ctrl+X shortcut.
To copy the whole row(s), use the corresponding context menu item.