Exporting Consensus

To export a consensus sequence of the assembly, select either the Export consensus item in the Consensus Area context menu or the Export ‣ Consensus item in the Reads Area context menu.

The Export Consensus dialog will appear:

Select a file and the desired file format. The consensus can be exported to a FASTA, FASTQ, GFF, GenBank, UGENE Database, or Vector NTI sequence file.

Modify the exported sequence name if required, and choose the consensus algorithm.

The consensus is exported with gaps if the Keep gaps check box is checked.

You can also select the region to export. It can be either the Whole sequence, a Visible region, or a Custom region.

When all the parameters are set, click the Export button.

The consensus sequence is exported to the file, and if the Add to project check box is checked, it is added to the current project and opened.