Exporting BLAST Results to Alignment

To export BLAST results as an alignment, select the results in the Annotations Editor and choose the Export->Export BLAST result to alignment option from the context menu. The following dialog will appear:

The following parameters are available:

  • Export to file: Name of the new file.
  • File format to use: Format of the new file. The following formats are available: CLUSTALW, FASTA, MSF, MEGA, NEXUS, PHYLIP Interleaved, PHYLIP Sequential, Stockholm.
  • Qualifier to use as name: Name of the qualifier. The following qualifiers are available: accession, def, id.
  • Add reference to alignment: Adds a reference to the alignment.
  • Add document to the project: Adds the new document to the project.

Select the options and click on the Export button.

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