Fetching Sequences from Remote Database

Each result annotation found with the remote BLAST in UGENE has “accession” and “id” qualifiers that can be used to fetch the corresponding sequences from the NCBI. The most efficient way to fetch the sequences for several annotations is as follows:

• Select the annotations in the Annotations Editor.
• Open the context menu.
• Choose either the Fetch sequences from remote database->Fetch sequences by ‘id’ from ‘blast result’ item or the Fetch sequences from remote database->Fetch sequences by ‘accession’ from ‘blast result’ item.

The following dialog will appear:

Select an output path in the dialog and click the OK button.