Base Content Algorithm Element

This algorithm searches for regions in a sequence that contain a specified percentage of a certain base.

Parameters in GUI

ParameterDescriptionDefault value
Annotate AsName for the result annotations.misc_feature
BaseSpecifies the base, i.e., A, C, G or T.You must specify a value!
PercentagePercentage of the base in a region. The value must be greater than or equal to 50%.90%
Min LengthMinimum length of a region. The value must be greater than or equal to 5.5 bp
Max LengthMaximum length of a region.5 bp
DirectionSee the description here.Any

Parameters in Schema File

Type: base-content

ParameterParameter in the GUIType
keyAnnotate Asstring
baseBasestring
percentPercentagenumeric
min-lenMin Lengthnumeric
max-lenMax Lengthnumeric
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