CDD Algorithm Element
When the element is used, the input nucleotide sequence is translated into six amino acid sequences. The translated sequences are used to query the NCBI Conserved Domain Database (CDD).
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Annotate As | Name of the result annotations. | CDD result |
| Expected value | E-value: number of expected hits by chance when searching a database of a particular size. | 10 |
| Min length | Minimum result length. | 50bp |
| Max length | Maximum result length. | 5000bp |
| Pattern | Filter for annotation: the qualifier value must contain the specified pattern. | (none) |
Parameters in Schema File
Type: CDD
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| key | Annotate As | string |
| evalue | Expected value | numeric |
| min-length | Min length | numeric |
| max-length | Max length | numeric |
| pattern | Pattern | string |