End-Start Constraint Element
Add the End-Start constraint to two algorithm elements. Let’s denote these elements as alg1 and alg2.
Constraint Explanation
Let:
- alg1_annot_end := the last nucleotide of an annotation obtained from alg1
- alg2_annot_start := the first nucleotide of an annotation obtained from alg2
The resulting annotations must satisfy the following rule:
Min distance ≤ Distance(alg1_annot_end, alg2_annot_start) ≤ Max distance
Parameters in GUI
| Parameter | Description | Default Value |
|---|---|---|
| Min distance | Minimum distance between an alg1 annotation end and an alg2 annotation start. | 0bp |
| Max distance | Maximum distance between an alg1 annotation end and an alg2 annotation start. | 0bp |
Parameters in Schema File
| Parameter | Parameter in GUI | Type |
|---|---|---|
min | Min distance | numeric |
max | Max distance | numeric |
type | (not in GUI) | distance |
distance-type | (not in GUI) | end-to-start |