Sequence View Extensions

The functionality of the Sequence View can be significantly enhanced with Sequence View Extensions. Below is a demonstration of its functionality.

The Circular Viewer displays the circular view of a sequence:

The 3D Structure Viewer adds 3D visualization for PDB and MMDB files:

The Chromatogram Viewer adds support for the visualization and editing of chromatograms:

The DNA Graphs Package displays various graphs for sequences:

The Dotplot provides a tool to create dot plots for DNA or RNA sequences.

Several other instruments add a graphical interface for popular sequence analysis methods:

For details, see the following sections of the documentation:

• Circular Viewer
  • Circular View Settings
• 3D Structure Viewer
  • Opening 3D Structure Viewer
  • Changing 3D Structure Appearance
    • Selecting Render Style
    • Selecting Coloring Scheme
    • Calculating Molecular Surface
    • Selecting Background Color
    • Selecting Detail Level
    • Enabling Anaglyph View
  • Moving, Zooming and Spinning 3D Structure
  • Highlight Region on 3D Structure
  • Selecting Models to Display
  • Structural Alignment
  • Exporting 3D Structure Image
  • Working with Several 3D Structure Views
  • Alignment Entropy Calculation
• Chromatogram Viewer
  • Exporting Chromatogram Data
  • Viewing Two Chromatograms Simultaneously
• Graphs Package
  • Description of Graphs
  • Graph Settings
  • Saving Graph Cutoffs as Annotations
• Dotplot
  • Creating Dotplot
  • Navigating in Dotplot
  • Zooming to Selected Region
  • Selecting Repeat
  • Interpreting Dotplot - Identifying Matches, Mutations, Inversions, etc
  • Editing Parameters
  • Filtering Results
  • Saving Dotplot as Image
  • Saving and Loading Dotplot
  • Building Dotplot for Currently Opened Sequence
  • Comparing Several Dotplots