Building Profile HMM Using HMMER2

Task Name: hmm2-build

Builds a profile HMM using the HMMER2 tools.

Parameters:

• in — semicolon-separated list of input multiple sequence alignment files. [String, Required]
• out — output HMM file. [String, Required]
• name — name of the profile HMM. [String, Optional, Default: “hmm_profile”]
• calibrate — enables/disables calibration. [Boolean, Optional, Default: true]
• seed — random seed, a non-negative integer. [Number, Optional, Default: 0]

Example:

ugene hmm2-build –in=CBS.sto –out=CBS.hmm