Converting MSA

Task Name: convert-msa

Converts a multiple sequence alignment file from one format to another.

Parameters:

in — input multiple sequence alignment file. [String, Required]

out — name of the output file. [String, Required]

format — format of the output file. [String, Optional]

The following values are available:

• clustal (default)
• fasta
• mega
• msf
• nexus
• phylip-interleaved
• phylip-sequential
• stockholm

Example:

ugene convert-msa –in=CBS.sto –out=CBS –format=msf