Fetching Sequence from Remote Database
Task Name: fetch-sequence
Fetches a sequence from a remote database. The supported databases are accessed via alias.
Supported Databases
| Database | Alias |
|---|---|
| NCBI Genbank (DNA) | genbank |
| NCBI Genbank (protein) | genbank-protein |
| Protein Data Bank | pdb |
| SwissProt | swissprot |
| UniProt | uniprot |
Parameters
--db— Database alias to read from.
Type:String, Required.--id— Semicolon-separated list of resource IDs in the database.
Type:String, Required.--save-dir— Directory to store sequence files loaded from the database.
Type:String, Optional.
Example
ugene fetch-sequence --db=PDB --id=3INS;1CRN