Launching Workflow Designer

To launch the Workflow Designer, select the Tools ‣ Workflow Designer item in the UGENE main menu. The following “Choose Output Directory” dialog appears:

The output directory is a common directory used to store all output files in the Workflow Designer. If this directory is used, a separate subdirectory is created for each run of a workflow. You can change this option in the Application Settings dialog.

The tool provides a multi-window user interface, so you can open and use as many Workflow Designer windows as you need simultaneously.