Amino Acid Translation Element
Translates a sequence into its amino acid translation or translations.
Element type: sequence-translation
Parameters
| Parameter | Description | Default value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Translate from | Specifies the position that should be used to translate the sequence from: first, second, third, or all (which would generate three output amino acid sequences). | all | pos-2-translate | string |
| Available values are: • all • first • second • third | ||||
| Auto-selected genetic code | Specifies that the genetic code should be selected automatically. | True | auto-translation | boolean |
| Genetic code | The genetic code that should be used to translate the input nucleotide sequence. | The Standard Genetic Code | genetic-code | string |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input Data
Name in Workflow File: in-sequence
Slots:
| Slot in GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |
And 1 output port:
Name in GUI: Amino sequence
Name in Workflow File: out-sequence
Slots:
| Slot in GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |
| Plain text | text | string |