Collocation Search Element
The Collocation Search Element finds groups of specified annotations within each supplied set of annotations and stores the identified regions as annotations.
Element type: collocated-annotation-search
Parameters
| Parameter | Description | Default Value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Result type | Choose to copy the original annotations or to annotate the found regions with new ones. | Create new annotations | result-type | string |
| Result annotation | Name of the result annotation to mark found collocations. (Required) | misc_feature | result-name | string |
| Include boundaries | Include the leftmost and rightmost boundary annotations in the result or exclude them. | True | include-boundary | boolean |
| Group of annotations | List of annotation names to search. Found regions will contain all the named annotations. (Required) | annotations | string | |
| Region size | Maximum allowed distance between the interesting annotations in a group. | 1000 | region-size | numeric |
| Must fit into region | Whether annotations must entirely fit within the specified region to form a group. | False | must-fit | boolean |
Input/Output Ports
| Port Name (GUI) | Workflow File Name | Slots |
|---|---|---|
| Input data | in-sequence | Sequence → sequence (sequence)Set of annotations → annotations (annotation-table-list) |
| Group annotations | out-annotations | Set of annotations → annotations (annotation-table) |