Fetch Sequences by ID From Annotation Element

This function parses annotations to find any IDs and fetches the corresponding sequences.

Element type: fetch-sequence

Parameters

ParameterDescriptionDefault ValueParameter in Workflow FileType
Save file to directoryThe directory to store sequence files loaded from a database.defaultsave-dirstring
NCBI databaseThe database to read from.nucleotidedatabasestring

Available values for NCBI database:

  • nucleotide
  • protein

Input/Output Ports

Input Port

  • Name in GUI: Input annotations
  • Name in Workflow File: in-annotations
Slot In GUISlot in Workflow FileType
Set of annotationsannotationsannotation-table

Output Port

  • Name in GUI: Sequence
  • Name in Workflow File: out-sequence
Slot In GUISlot in Workflow FileType
Set of annotationsannotationsannotation-table
Sequencesequencesequence
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