Import PHRED Qualities Element
This element adds corresponding PHRED quality scores to the sequences. Use this element to convert .fasta and .qual pairs to the fastq format.
Element type: import-phred-qualities
Parameters
| Parameter | Description | Default value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| PHRED input | Path to a file with PHRED quality scores. | url-in | string | |
| Quality format | Format to encode quality scores. | Sanger | quality-format | string |
Available values are:
- Sanger
- Illumina 1.3+
- Solexa/Illumina 1.0
Input/Output Ports
The element has 1 input port:
- Name in GUI: DNA sequences
- Name in Workflow File: in-sequence
Slot In GUI Slot in Workflow File Type Sequence sequence sequence
And 1 output port:
- Name in GUI: DNA sequences with imported qualities
- Name in Workflow File: out-sequence
Slot In GUI Slot in Workflow File Type Sequence sequence sequence