Intersect Annotations Element
Intersects two sets of annotations denoted as A and B.
Element type: intersect-annotations
Parameters
| Parameter | Description | Default value | Parameter in Workflow File |
|---|---|---|---|
| Result annotations | Select one of the following:
| Overlapped annotations from set A | report |
| Unique overlaps | If the parameter value is “True,” write the original A entry once if any overlaps are found in B. In other words, just report the fact that at least one overlap was found in B. The minimum overlap number is ignored in this case. If the parameter value is “False,” the A annotation is reported for every overlap found. | True | unique |
| Minimum overlap | Minimum overlap required as a fraction of an annotation from set A. By default, even 1 bp overlap between annotations from set A and set B is taken into account. Yet, sometimes you may want to restrict reported overlaps to cases where the annotations in B overlap at least X% (e.g., 50%) of the A annotation. This parameter is only available if the parameter “Unique overlaps” is “False.” | 0.0000001% | minimum-overlap |
Input/Output Ports
The element has 2 input ports:
| Name in GUI | Name in Workflow File | Slots | Slot In GUI | Slot in Workflow File | Type |
|---|---|---|---|---|---|
| Annotations A | input-annotations-a | annotations | Annotations A | annotations | annotation-table |
| Annotations B | input-annotations-b | annotations | Annotations B | annotations | annotation-table |
And 1 output port:
| Name in GUI | Name in Workflow File | Slots | Slot In GUI | Slot in Workflow File | Type |
|---|---|---|---|---|---|
| Annotations | output-intersect-annotations | annotations | Annotations | annotations | annotation-table |