Convert Text to Sequence Element
Converts the input text into a sequence.
Element type: convert-text-to-sequence
Parameters
| Parameter | Description | Default value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Sequence name (required) | Result sequence name. | Sequence | sequence-name | string |
| Sequence alphabet | Alphabet of the sequence. Choose Auto to auto-detect, or select: • All symbols • Extended DNA • Extended RNA • Standard DNA • Standard RNA • Standard amino | Auto | alphabet | string |
| Skip unknown symbols | If True, ignores symbols not in the selected alphabet. | True | skip-unknown | boolean |
| Replace unknown with | Replaces unknown symbols with a specified character. | N | replace-unknown-with | string |
Input/Output Ports
| Port Name (GUI) | Workflow File Name | Slots |
|---|---|---|
| Input text | in-text | Plain text → text (string) |
| Output sequence | out-sequence | Sequence → sequence (sequence) |