Write FASTA Element
This element receives message(s) with sequence data and saves the data to the specified file(s) in FASTA format.
Element type: write-fasta
Parameters
| Parameter | Description | Default Value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Output file | Location of the output data file. If this attribute is set, then the “Location” slot is not taken into account. | url-out | string | |
| Output file suffix | This suffix will be used for generating the output file name. | url-suffix | string | |
| Existing file | If a target file already exists, you can specify how it should be handled: either overwritten, renamed, or appended (if supported by file format). | Rename | write-mode | numeric |
| Available values are: | ||||
| * 0 - for overwrite | ||||
| * 1 - for append | ||||
| * 2 - for rename | ||||
| Accumulate objects | Accumulates all incoming data in one file or creates separate files for each input. In the latter case, an incremental numerical suffix is added to the file name. | True | accumulate | boolean |
Input/Output Ports
The element has 1 input port:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Name in GUI: Sequence | Name in Workflow File: in-sequence | |
| Sequence | sequence | sequence |
| Location | url | string |
| FASTA header | fasta-header | string |