Align with ClustalO Element
Aligns multiple sequence alignments (MSAs) using ClustalO.
Element type: ClustalO
Parameters
| Parameter | Description | Default Value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Number of iterations | Number of combined guide-tree/HMM iterations. | 1 | num-iterations | numeric |
| Number of guidetree iterations | Maximum number of guidetree iterations. | 0 | max-guidetree-iterations | numeric |
| Number of HMM iterations | Maximum number of HMM iterations. | 0 | max-hmm-iterations | numeric |
| Set auto options | Automatically set options (this might overwrite some options you set). | False | set-auto | boolean |
| Tool path | Path to the ClustalO tool. The default path can be set in the UGENE application settings. | Default | path | string |
| Temporary directory | Directory to store temporary files. | Default | temp-dir | string |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input MSA
Name in Workflow File: in-msa
Slots:
| Slot in GUI | Slot in Workflow File | Type |
|---|---|---|
| MSA | msa | malignment |
And 1 output port:
Name in GUI: ClustalO result MSA
Name in Workflow File: out-msa
Slots:
| Slot in GUI | Slot in Workflow File | Type |
|---|---|---|
| MSA | msa | malignment |