Extract Consensus from Alignment as Sequence

Extracts the consensus sequence from an incoming multiple sequence alignment (MSA) and outputs it as a sequence.

Element type: extract-msa-consensus-sequence

Parameters

ParameterDescriptionDefault valueParameter in Workflow FileType
AlgorithmThe algorithm used to calculate the consensus.(none)algorithmstring
ThresholdThe threshold used by the algorithm (e.g., percentage agreement).100thresholdnumeric
Keep gapsDetermines whether gaps should be kept in the resulting consensus sequence.Truekeep-gapsboolean

Input/Output Ports

Input Port

  • Name in GUI: in-msa
  • Name in Workflow File: in-msa
  • Slots:
Slot In GUISlot in Workflow FileType
MSAmsamsa

Output Port

  • Name in GUI: out-sequence
  • Name in Workflow File: out-sequence
  • Slots:
Slot In GUISlot in Workflow FileType
Sequencesequenceseq
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