Extract the consensus string from an incoming multiple sequence alignment (MSA) and output it as plain text.
Element type: extract-msa-consensus-string
Parameters
| Parameter | Description | Default value | Parameter in Workflow File | Type |
|---|
| Algorithm | The algorithm used to calculate the consensus. | (none) | algorithm | string |
| Threshold | The threshold used by the algorithm (e.g., percentage agreement). | 100 | threshold | numeric |
- Name in GUI:
in-msa - Name in Workflow File:
in-msa - Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|
| MSA | msa | msa |
Output Port
- Name in GUI:
out-sequence - Name in Workflow File:
out-text - Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|
| Plain text | text | string |