Extract Consensus from Assembly Element

Extracts the consensus sequence from the incoming assembly.

Element Type

Element type: extract-consensus

Parameters

ParameterDescriptionDefault ValueParameter in Workflow FileType
AlgorithmThe algorithm for extracting consensus.Defaultalgorithmstring
Keep gapsIf set to True, the resulting consensus will contain gaps.Truekeep-gapsboolean

Input/Output Ports

Input Port

  • Name in GUI: in-assembly
  • Name in Workflow File: in-assembly
Slot in GUISlot in Workflow FileType
Assembly dataassemblyassembly

Output Port

  • Name in GUI: out-sequence
  • Name in Workflow File: out-sequence
Slot in GUISlot in Workflow FileType
Sequencesequencestring
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