Change Chromosome Notation for VCF Element
Changes chromosome notation for each variant from the input VCF or other variation files.
Element type: rename-chromosome-in-variation
Parameters
| Parameter | Description | Default value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Replace prefixes | Input the list of chromosome prefixes to replace (e.g., NC_000). Separate multiple values with ;. | prefixes-to-replace | string | |
| Replace by | Input the prefix to use instead (e.g., chr). | prefix-replace-with | string |
Input/Output Ports
| Port Name (GUI) | Workflow File Name | Slots |
|---|---|---|
| Input file URL | in-file | Source URL → url (string) |
| Output file URL | out-file | Produced URL → url (string) |