Create VCF Consensus Element
Apply VCF variants to a FASTA file to create a consensus sequence.
Element type: vcf-consensus
Parameters
| Parameter | Description | Default value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Output FASTA consensus | The URL to the output file with the resulting consensus. | consensus-url | string |
Input/Output Ports
| Port Name (GUI) | Workflow File Name | Slots |
|---|---|---|
| Input FASTA and VCF | in-data | Fasta url → fasta (string)VCF url → vcf (string) |
| Fasta consensus URL | out-consensus | out-consensus → out-consensus (string) |