Build Frequency Matrix Element
This component constructs a frequency matrix. Frequency matrices are used for the probabilistic recognition of transcription factor binding sites.
Element type: fmatrix-build
Parameters
| Parameter | Description | Default value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Matrix type | Dinucleic matrices are more detailed, while mononucleic ones are more useful for small input datasets. | Mononucleic | type | boolean |
Available values are:
true– for Dinucleicfalse– for Mononucleic
Input/Output Ports
The element has 1 input port:
Name in GUI: Input alignment
Name in Workflow File: in-msa
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| MSA | msa | msa |
And 1 output port:
Name in GUI: Frequency matrix
Name in Workflow File: out-fmatrix
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Frequency matrix | fmatrix | fmatrix |