Convert UQL Schema Results to Alignment
This schema allows you to analyze a sequence using a query and save the results as an alignment of selected features.
How to Use This Sample
If you haven’t used the workflow samples in UGENE before, check the “How to Use Sample Workflows” section of the documentation.
Workflow Sample Location
The workflow sample “Convert UQL Schema Results to Alignment” can be found in the “Conversions” section of the Workflow Designer samples.
Workflow Image
The workflow looks as follows:
Workflow Wizard
The wizard has 2 pages:
1. Input Sequence(s)
On this page, you must input the sequence(s).
2. Annotate with UQL
On this page, you can modify annotation and output settings.
| Parameter | Description |
|---|---|
| UQL schema file | Schema file. |
| Merge | If set to true, merges regions of each result into a single annotation. |
| Offset | Left and right offset to apply to merged annotations (if “Merge” is true). |
| Annotation names | File with annotation names (whitespace-separated) or list of annotation names to include/exclude. |
| Accept or filter | Choose whether to accept only the specified annotation names or to filter them out. |
| Result file | Location of the output data file. If this is set, it overrides the “Location” slot of the output port. |
| Document format | Format of the output file. |