Extract Consensus from Assembly
The workflow sample below uses input assemblies to extract consensus sequences and saves them to FASTA files.
How to Use This Sample
If you haven’t used workflow samples in UGENE before, see the “How to Use Sample Workflows” section of the documentation.
Workflow Sample Location
The sample “Extract Consensus from Assembly” can be found in the “NGS” section of the Workflow Designer samples.
Workflow Image
The opened workflow looks like this:
Workflow Wizard
The wizard has 1 page:
1. Extract Consensus Page
On this page, you must:
- Input an assembly file
- Select an output file
- Optionally modify other input parameters
Available Parameters
| Parameter | Description |
|---|---|
| Assembly | Semicolon-separated list of paths to the input files. |
| Algorithm | The algorithm used for consensus extraction. |
| Keep gaps | Set this to True if the resulting consensus must preserve gaps. |
| Output files | Path to the output file. If set, the Location slot in the port is not used. |