Prepare a query schema and save it to a file.
Open a nucleotide sequence that you want to analyze with this query schema. You can see the sequence displayed in the Sequence view.
Select the Analyze ‣ Find query designer pattern item in the Actions main menu or in the context menu:
The Analyze with query schema dialog appears:
Browse for the file with a query schema. The selected schema preview appears in the dialog, for example:
You can also adjust other parameters:
Region — the sequence range to analyze with the query schema, you can select:
- Whole sequence — to analyze the whole sequence.
- Selected range — to analyze the currently selected sequence region. This item is disabled if there is no region selected.
- Custom range — to specify manually a range to analyze.
In the Save annotation(s) to group you can set up a file to store annotations. It could be either an existing annotation table object, a new annotation table or auto-annotations table (if it is available).
In the Annotation parameters group you can specify the name of the group. If the group name is set to <auto> UGENE will use the group name as the name for the group. Also you can add a description in the corresponding text field.