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The element searches the input sequence for transcription factor binding sites (TFBSs) significantly similar to the specified weight matrix.

Parameters in GUI

ParameterDescriptionDefault value
Annotate AsName of the result annotations.misc_feature
DirectionSee the description here.Any
MatrixPath to the profile.You must specify a value!
Min scoreMinimum score to detect TFBS.85%

 

Parameters in Schema File

Type: wsearch

ParameterParameter in the GUIType
keyAnnotate Asstring
matrixMatrixstring
min-scoreMin scorenumeric
strandDirection

string

Available values are:

  • complement
  • direct
  • both
  • No labels