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To build a dotplot for currently opened sequences, create a multiple view containing these sequences. It can be arranged by dragging the corresponding sequence objects (the items strated with the “[s]”) into the same Sequence View.

Then right-click on the created view and select the Analyze ‣ Build dotplot item in the context menu. Every sequence from the current multiple sequence view can be used to build a dotplot.

 

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If you need to compare a sequence with itself, you can activate the menu from a single Sequence View.

 

 

 

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