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The editor has capabilities to build a Hidden Markov Model profile based on the multiple sequence alignment.

This functionality is based on the Sean Eddy’s HMMER package.

To build a HMM profile select the Advanced ‣ Build HMMER2 profile or the Advanced ‣ Build HMMER3 profile item in the Actions main menu or in the context menu.

Learn more about the HMM tool in the documentation pages of the HMM2 and the HMM3 plugins.

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