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To configure an external tool:

  1. Make sure the tool is installed on your system.
  2. Set a path to the tool executable file in UGENE. It can be set on the External Tools tab of the Application Settings dialog.

If the path hasn’t been set for a tool, UGENE menu items that launch the tool are displayed in italic. For example, on the image below a path for the ClustalW external tool has been set, and paths for MAFFT and T-Coffee has not:



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