Skip to end of metadata
Go to start of metadata
File formatFile extensionReadWriteComment
ABIF*.ab1, *.abi, *.abif+-

A chromatogram file format.

See also: Chromatogram Viewer

ACE*.ace,+-

A file format for storing data about genomic contigs.

See also: Alignment Editor

Bairoch*.bairoch++

A file format to store enzymes.

See also: Restriction Analysis

BAM*.bam+-

Binary compressed SAM format.

See also: Assembly Browser

ClustalW*.aln++

A multiple sequence alignments (MSA) file format.

See also: Alignment Editor

EBWT*.ebwt++

A Bowtie prebuilt index file.

See also: Bowtie

EMBL*.em, *.emb, *.embl+-

A rich format for storing sequences and their annotations.

See also: Sequence View

FASTA*.fa, *.mpfa, *.fna, *.fsa, *.fas, *.fasta, *.sef *.seqs++

One of the oldest and simplest sequence file format.

See also: Sequence View

FASTQ*.fastq++

A file format used to store a sequence and its corresponding quality scores.

It was originally developed at the “Wellcome Trust Sanger Institute”.

See also: Sequence View

Genbank*.gb, *.gbk, *.gen, *.genbank++

A rich format for storing sequences and associated annotations.

See also: Sequence View

GFF*.gff++

The Gene Finding Format (GFF) format is used to store features and annotations.

See also: Sequence View

HMM*.hmm++

A file format to store HMM profiles.

See also: HMM2HMM3

MMDB*.prt+-

ASN.1 format used by the Molecular Modeling Database (MMDB).

See also: 3D Structure Viewer

MSF*.msf++

A multiple sequence alignments file format.

See also: Alignment Editor

Mega*.meg, *.meg.gz+ 

A multiple sequence alignments file format.

See also: Alignment Editor

Newick*.nwk, *.newick++

A tree file format.

See also: Building Phylogenetic TreePhylogenetic Tree Viewer

Nexus*.nex *.nxs++

A multiple alignment and phylogenetic trees file format.

See also: Alignment EditorBuilding Phylogenetic TreePhylogenetic Tree Viewer

PDB*.pdb+-

The Protein Data Bank (PDB) format allows to view the 3D structure of the sequence.

See also: 3D Structure Viewer

pDRAW32*.pdw+-

A sequence file format used by pDRAW32 software.

See also: Sequence View

PFM*.pfm++

A file format for a position frequency matrix.

See also: Weight Matrix

Phylip*.phy++

A multiple alignment file format.

See also: Alignment Editor

PWM*.pwm++

A file format for a position weight matrix.

See also: Weight Matrix

Raw*.seq++

A raw sequence format.

See also: Sequence View

SAM*.sam++

The Sequence Alignment/Map (SAM) format is a generic alignment format for storing read alignments against reference sequences.

See also: Assembly BrowserBowtieUGENE Genome Aligner

SCF*.scf+-

It is a Standard Chromatogram Format.

See also: Chromatogram Viewer

SITECON*.sitecon+-

A file format to store TFBS profile.

See also: SITECON

Stockholm*.sto++

A multiple sequence alignments file format.

See also: Alignment Editor

Swiss-Prot*.txt *.sw+-

An annotated protein sequence in format of the UniProtKB/Swiss-Prot database.

See also: Sequence View

Vector NTI Sequence*.gb *.gp++

A rich format for storing sequences and associated annotations, produced by Vector NTI software.

See also: Sequence View

VCF*.vcf++

The VCF specifies the format of a text file used for storing gene sequence variations.

See also: Assembly Browser

  • No labels