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Align input sequences (e.g. Sanger reads) to the reference sequence.

Parameters in GUI

ParameterDescriptionDefault value
Reference URLA URL to the file with a reference sequence. 

Parameters in Workflow File

Type: align-to-reference

ParameterParameter in the GUIType
referenceReference URL

string

Input/Output Ports

The element has 1 input port:

Name in GUI: Input sequence

Name in Workflow File: in-sequence

Slots:

Slot In GUISlot in Workflow FileType
Sequencesequence

sequence

And 1 output port:

Name in GUI: Aligned data

Name in Workflow File: out

Slots:

Slot In GUISlot in Workflow FileType
Set of annotationsannotationsann_table
MSAmsamalignment
Sequencesequencesequence
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