Skip to end of metadata
Go to start of metadata

Translates a sequence into it’s amino translation or translations.

Parameters in GUI

ParameterDescriptionDefault value
Translate fromSpecifies position that should be used to translate the sequence from: first, second, third or all (three output amino sequences would be generated).all
Auto selected genetic codeSpecifies that genetic code should be selected automatically.True
Genetic codeGenetic code that should be used to translate the input nucleotide sequence.The Standard Genetic Code

Parameters in Workflow File 

Type: sequence-translation

 

ParameterParameter in the GUIType
pos-2-translateTranslate from

string

Available values are:

  • all
  • first
  • second
  • third
auto-translationAuto selected genetic codeboolean
genetic-codeGenetic codestring

Input/Output Ports

The element has 1 input port:

Name in GUI: Input Data

Name in Workflow File: in-sequence

Slots:

Slot In GUISlot in Workflow FileType
Sequencesequencesequence

And 1 output port:

Name in GUI: Amino sequence

Name in Workflow File: out-sequence

Slots:

Slot In GUISlot in Workflow FileType
Sequencesequencesequence
Plain texttextstring
  • No labels