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Plots the PhastCons scores profiles.

Parameters in GUI

ParameterDescriptionDefault value
Output fileFile to store phastcons results (BMP). 
TitleTitle of the figure (--title).Average Phastcons around the Center of Sites
LabelLabel of data in the figure (--bed-label).Conservation_at_peak_summits
Assembly versionThe directory to store phastcons scores (--phasdb).hg19
Window widthWindow width centered at middle of regions (-w).1000
HeightHeight of plot (--height).1000
WidthWidth of plot (--width).1000

Parameters in Workflow File

Type: conservation_plot-id

ParameterParameter in the GUIType
output-fileOutput file

string

titleTitlestring
labelLabelstring
assembly_versionAssembly versionstring
windos_sWindow widthnumeric
heightHeightnumeric
widthWidthnumeric

Input/Output Ports

The element has 1 input port:

Name in GUI: conservation_plot data

Name in Workflow File: in-data

Slots:

Slot In GUISlot in Workflow FileType
Input regionscp_treat-annann-table-list



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