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Finds groups of specified annotations in each supplied set of annotations, stores found regions as annotations.

Parameters in GUI

ParameterDescriptionDefault value
Result typeCopy original annotations or annotate found regions with new ones.Create new annotations
Result annotation (required)Name of the result annotation to mark found collocations.misc_feature
Include boundariesInclude most left and most right boundary annotations regions into result or exclude them.True
Group of annotations (required)List of annotation names to search. Found regions will contain all the named annotations. 
Region sizeEffectively this is the maximum allowed distance between the interesting annotations in a group.1000
Must fit into regionSpecifies whether the interesting annotations should entirely fit into the specified region to form a group.False

Parameters in Workflow File

Type: collocated-annotation-search

ParameterParameter in the GUIType
result-typeResult typestring
result-nameResult annotationstring
annotationsGroup of annotationsstring
include-boundaryInclude boundariesboolean
region-sizeRegion sizenumeric
must-fitMust fit into regionboolean

Input/Output Ports

The element has 1 input port:

Name in GUI: Input data

Name in Workflow File: in-sequence

Slots:

Slot In GUISlot in Workflow FileType
Sequencesequencesequence
Set of annotationsannotationsannotation-table-list

And 1 output port:

Name in GUI: Group annotations

Name in Workflow File: out-annotations

Slots:

Slot In GUISlot in Workflow FileType
Set of annotationsannotationsannotation-table
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