Skip to end of metadata
Go to start of metadata

Convert bedGraph files to bigWig.

Parameters in GUI

ParameterDescriptionDefault value
Output directorySelect an output directory. Custom - specify the output directory in the 'Custom directory' parameter. Workflow - internal workflow directory. Input file - the directory of the input file. Input file
Custom directory

Specify the output directory.

 
GenomeFile with genome length.human.hg18
Output nameA name of an output file. If default of empty value is provided the output name is the name of the first file with additional extention. 
Block sizeNumber of items to bundle in r-tree (-blockSize).256
Items per slotNumber of data points bundled at lowest level (-itemsPerSlot).1024
UncompressedIf set, do not use compression.(-unc).False

Parameters in Workflow File 

Type: bgtbw-bam

ParameterParameter in the GUIType
out-modeOutput directorynumeric
custom-dirCustom directorystring
genomeGenomestring
out-nameOutput namestring
bsBlock sizenumeric
itsItems per slotnumeric 
uncUncompressedboolean 

Input/Output Ports

The element has 1 input port:

Name in GUI: BedGrapgh files

Name in Workflow File: in-file

Slots:

Slot In GUISlot in Workflow FileType
Source URLurlstring

And 1 output port:

Name in GUI: BigWig files

Name in Workflow File: out-file

Slots:

Slot In GUISlot in Workflow FileType
Source URLurlstring
  • No labels