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Apply VCF variants to a fasta file to create consensus sequence.

Parameters in GUI

ParameterDescriptionDefault value
Output FASTA consensusThe url to the output file with the result consensus. 

Parameters in Workflow File

Type: vcf-consensus

ParameterParameter in the GUIType
consensus-urlOutput FASTA consensus

string

Input/Output Ports

The element has 1 input ports:

Name in GUI: Input FASTA and VCF

Name in Workflow File: in-data

Slots:

Slot In GUISlot in Workflow FileType
Fasta urlfastastring
VCF urlvcfstring


And 1 
output port:

Name in GUI: Fasta consensus url

Name in Workflow File: out-consensus

Slots:

Slot In GUISlot in Workflow FileType
out-consensusout-consensusstring

 

 

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