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Extract the consensus sequence from the incoming multiple sequence alignment.

Parameters in GUI

ParameterDescriptionDefault value
AlgorithmThe algorithm of consensus extracting. 
ThresholdThe threshold of the algorithm.100
Keep gapsSet this parameter if the result consensus must keep the gaps.True

Parameters in Workflow File

Type: extract-msa-consensus-sequence

ParameterParameter in the GUIType
algorithmAlgorithmstring
thresholdThresholdnumeric
keep-gapsKeep gapsboolean

Input/Output Ports

The element has 1 input port:

Name in GUI: in-msa

Name in Workflow File: in-msa

Slots:

Slot In GUISlot in Workflow FileType
MSAmsamsa

And 1 output port:

Name in GUI: out-sequence

Name in Workflow File: out-sequence

Slots:

Slot In GUISlot in Workflow FileType
Sequencesequenceseq
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